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Publication Antimalarial Activity of Nigella sativa L. Seed Extracts and Selection of Resistance in Plasmodium berghei ANKA in a Mouse Model(Journal of Pathogens, 2021-02-03) Yusuf Rahma Udu; Oyweri Job; Gathirwa JeremiahChemotherapy plays a crucial role in malaria control. However, the main obstacle to treatment has been the rise of parasite resistance to most antimalarial drugs. Artemisinin- based combination therapies (ACTs) remain the most effective antimalarial medicines available today. However, malaria parasite tolerance to ACTs is now increasingly prevalent especially in Southeast Asia presenting the danger of the spread of ACTs resistance to other parts of the world. Consequently, this creates the need for alternative effective antimalarials. (erefore, this study sought out to determine antimalarial potential, safety, and resistance development of the extracts in a mouse model. Method. Methanolic and ethyl acetate extracts were obtained by solvent extraction. (e extracts were assayed for acute toxicity in vivo. Additionally, the two extracts were evaluated for antimalarial activity in vivo against Plasmodium berghei ANKA strain by the 4-day suppressive test at 500, 250, and 125 mg/kg/day. Packed cell volume was evaluated to determine anemia manifestation. Finally, continuous drug pressure experiment at 500 mg/kg and DNA amplification via PCR were conducted. (e amplicons underwent through Sanger sequencing. Results. (ere was no toxicity realized in the animals at 2000 mg/kg. Importantly, high parasitemia suppression of 75.52% and 75.30% using a dose of 500 mg/kg of methanolic and ethyl acetate extracts, respectively, was noted. (e extracts were able to reverse packed cell volume reduction. Nigella sativa-resistant phenotype was selected as delayed parasite clearance. However, there was no change in the nucleotide sequences of PbMDR1 and PbCRT genes. Conclusion. (e results provide room for future exploitation of the plant as an antimalarialPublication Cattle Breeds: Extinction or Quasi-Extant?(Multidisciplinary Digital Publishing Institute, 2013-08-27) Bett, Rawlynce C.; Okeyo, Mwai A.; Malmfors, Birgitta; Johansson, Kjell; Agaba, Morris; Kugonza, Donald R.; Bhuiyan, A. K. F. H.; Filho, Anibal E. Vercesi; Mariante, Arthur S.; Mujibi, Fidalis D.; Philipsson, JanUniquely selected breeds bred over thousands of years of domestication in a wide range of environments have been declared extinct over the last century. Still more breeds are at risk of becoming extinct and the rate continues to accelerate. Assessing the current status and possible future dynamics of livestock breeds is therefore a critical step in the management of Animal Genetic Resources (AnGR). This study applies a qualitative approach to comprehensively analyze cattle genetic resources in selected countries in order to better understand the risk status of cattle breeds and those that need to be considered extinct and/or quasi-extant. The status of each breed, i.e., not at risk, critical, endangered and extinct, was verified using information available at the Domestic Animal Diversity Information System (DAD-IS) web site, as well as cattle statistics (where available) and a breed survey. In most examples, breeds listed as extinct have played important roles in the development of new breeds, and should not be classified as extinct, unless proven otherwise, given that even breeds existing in vivo are developing. Therefore, a new risk status quasi-extant for this category of cattle breeds is suggested. In addition, based on the findings of this study, the concept of breed needs to be questioned as relates to it being a good measure of genetic diversity. Further investigations of the situation of cattle breeds (and other livestock species) in more countries/continents using similar categories are deemed necessary.Publication Chemical and Antioxidant Characterization of Dovyalis Caffra and Dovyalis Abyssinica Fruits in Kenya(ScienceDirect, 2022-10) Mwangi Daniel; Waweru a Joshua; Mbaabu Arimi a; Eunice Marete b; Niamh HarbourneAbstract This study aimed at chemical characterization of Dovyalis caffra (Hook.f. & Harv.) Sim. and Dovyalis abyssinica (A. Rich.) Warb. fruits from Kinamba Town (KT) in Laikipia county and Gitoro Forest (GF) in Meru county of Kenya. All analysed fresh fruit samples had low pH values averaging at 2.67. Other tests showed D. abyssinica- GF to be significantly inferior to D. caffra-GF and D. caffra-KT in terms of TSS, TSS:TTA ratio, and ascorbic acid content. Based on these parameters, D. caffra-KT presents itself with a higher potential for direct consumption as compared to D. caffra- GF. Proximate analysis of dried fruit pulps demonstrated D. abyssinica-GF to be significantly higher in ash content and significantly lower in protein and fat contents compared to the other two samples. There were insignificant difference in the fibre and carbohydrate contents of all the fruit samples. In phytochemical analysis, D. caffra-GF recorded the highest total polyphenol content of 1845 mg Gallic acid equivalent (GAE)/100 g while D. abyssinica-GF reported the lowest figure of 1128 mg GAE/100 g. Flavonoid and simple phenols fractions were in the range of 18.15–26.85% and 73.15–81.85% respectively in all fruit samples. As for antioxidant activity, D. caffra-GF recorded significantly high scores in both DPPH and CUPRAC assays, and D. abyssinica-GF the lowest. The range of DPPH and CUPRAC scores for all samples was 1995–4993 mg L-ascorbic acid/100 g and 1384–2303 mg L-ascorbic acid/100 g respectively. The current study presents the nutritional and health potential of D. caffra and D. abyssinica fruits. This forms a good basis for future adoption and exploitation of these fruits.Publication Common Peri Parturient Diseases, Disorders and Levels of Serum Nutritional Elements of One Humped Female Camel (Camelus dromedaries) in Northern Kenya(Science publishing group, 2025) Florence Thiakunu, James Kirimi, Joshua ArimiCamel rearing systems in the Arid and Semi Arid lands are undergoing significant changes, particularly around trading centers. More intensive camel production practices are replacing traditional extensive production systems. A cross-sectional study was conducted in Burat Ward, Isiolo County for intensive production systems and Laisamis, Marsabit County (extensive production systems). The aim of the study was to investigate the prevalence of common peri-parturient diseases and assess whether production systems and physiological status influence variations in serum levels of glucose, calcium, and magnesium. Data collection methods included focus group discussions, structured interviews, and blood sample analysis. The data were analyzed using descriptive statistics, mean comparisons, and Analysis of Variance. Results revealed that the prevalence of common diseases were higher in Laisamis (13.32-27%) than in Burat (4.59-12.06%). Likewise, gross mortality was higher in Laisamis (37.39%) than Burat (7.09%). Serum glucose levels were significantly lower in peri-parturient camels (3.91 and 4.45 mmol/L) compared to those in ordinary physiological status (6.09 mmol/L). Calcium levels remained consistent across physiological statuses and production systems (10.62-11.39 mg/dl). Magnesium levels were similar across physiological statuses but varied depending on the production system, they were higher in Burat (2.91-3.08 mg/dl) than Laisamis (2.46-2.71mg/dl). Most of the camels had below, normal and above normal levels of serum glucose, calcium and magnesium respectively. This was an indication that magnesium levels are influenced by dietary availability rather than physiological status. Malnutrition was the leading cause of death around parturition, primarily driven by negative energy balance. Blood glucose levels were found to depend on the physiological status of the camel, while calcium levels are tightly regulated by homeostatic mechanisms. Magnesium levels, however, depend on dietary intake. The study recommends improving camel nutrition during late pregnancy and early lactation to reduce the risk of metabolic and nutritional disorders.Publication Comparative Analysis of Communication Channels for Diffusion and Adoption of Quality Protein Maize: The Case of Kathonzweni and Kirinyaga, Kenya(University of Nairobi, 2015) Wafula, Carolyne KDespite the use of various communication strategies in Kenya, access and use of agricultural information by rural farming communities and other actors along the agricultural information chain is inadequate to cope with challenges in crop production leading to high levels of poverty. In Kirinyaga and Makueni counties, poverty levels of people living in urban areas are 26 % and 35% respectively, with about 67% of the rural populations living below the poverty line. This study, therefore, investigated how different communication channels used in disseminating new or proven agricultural technologies in Africa by the DONATA project among the smallholder farmers in Kirinyaga in Central and Kathonzweni in Eastern counties of Kenya have influenced the farmers decision to adopt quality protein maize (QPM). Random sampling technique was used to select respondents for the survey and primary data collected using structured questionnaires which involved 210 farmers, comprising of 110 from Kathonzweni and from 100 Kirinyaga. Descriptive statistics, covariance analysis and binary logistic regression were applied through SPSS application to ascertain the factors contributing to diffusion and adoption of QPM technologies. The levels of quality protein maize awareness in Kathonzweni were much higher 100% compared to Kirinyaga 98%. Farmer to farmer and farmer groups in Kirinyaga and extension services in Kathonzweni play a major role in farmer awareness of quality protein maize technologies. The results from the binary logistic regression indicates socio economic characteristics in Kathonzweni and Kirinyaga such as age and marital status play a big role in diffusion and adoption of quality protein maize. Field days in both study regions contributed significantly to increased QPM adoption. Farming was found to be the main source of income with 97.3% in Kathonzweni and 98% Kirinyaga. Lack of seed and climate change were major constraints affecting agricultural production in the study areas. It is therefore recommended that farmer field days, demonstrations, farmer field schools, farmer to farmer and group meetings continue being promoted through increased extension visits, and investing in farmer education via seminars, as vehicles of disseminating agricultural innovations. Information and communication technologies like radio, mobile phone and television should be used to complement the conventional channels which promote access to quality protein maize information. This will increase adoption, hence increased production and high yields which will be part of the solution to food insecurity and raising poverty levels.Publication Development of a Complete Meal From Underutilized Indigenous and Exotic foods(Reseach gate, 2022-09) Arimi Josh; Musembi Amos; Kibowott C; Kiptoo K.; Awino AnnettAbstract A complete meal is a food served and eaten in one sitting whose nutrient variety has been optimized. Green bananas are a good source of resistant starch and dietary fibre while Irish potatoes are rich in starch and dietary fibre. Moringa leaves are rich in protein, minerals and vitamins while being low calorific value. Fig gourd leaves are mainly rich in vitamins. However, many people prefer ripe bananas as snacks/fruit to cooked green ones. Moringa leaves are mainly used for medicinal purposes hence rarely used as a food item. Exotic vegetables are mostly preferred in food processing to indigenous ones hence making the indigenous vegetables underutilized. Development of a complete meal using these neglected food items would improve their utilization. The bananas, fig gourd leaves powder was prepared that could be reconstituted at the time of need. The flours were blended into a paste and a pellet as the final product in a ratio of Moringa: potato flour: fig gourd leaves (1:10:1). The paste and pellets were subjected to proximate analysis and sensory evaluation. The proximate composition of the paste was 3.22±0.5, 12.83±0.8 2.86±0.2, 11.32±0.6% for protein, fat, fibre and ash. The product was formulated to provide the RDA for an average adult of 62kg. The overall acceptability of the product by sensory panelist was liked moderately by 70% of the panelists making it viable food product.Publication Digestibility and Antinutrient Properties of Acidified and Extruded Maize–Finger Millet Blend in the Production of Uji(ScienceDirect, 2004) Onyango Calvin; Noetzold Horst; Ziems Annette; Hofmann Thea; Bley Thomas; Henle ThomasLactic and citric acids were used as alternatives to backslop fermentation in the manufacture of extruded uji (a thin porridge from eastern Africa). Acidity of the blends was reduced by fermentation or progressively lowered with 0.1, 0.5 and 1.0 mol/l lactic or citric acids before extrusion. The absence of ethanol soluble starch in the extrudates indicated that extrusion solubilizes starch without formation of maltodextrins. In vitro starch digestibility increased from 20 mg maltose/g starch in the raw blend to about 200 mg/g after extrusion. Extrusion reduced total dietary fibre by 39–68%, redistributed soluble to insoluble fibre ratios and had a negligible effect on the formation of resistant starch (less than 1 g/100 g). In vitro protein digestibility increased after fermentation or acid treatment followed by extrusion. Nitrogen solubility index decreased by 40–50% when the unfermented, lactic or citric acid treated blends were extruded, but increased by 20% when the blend was fermented before extrusion. Amino acid analysis showed that histidine, lysine and arginine contents were lowest in the fermented-extruded blends. Tannin content decreased from 1677 mg/100 g in the raw blend to between 551 and 1093 mg/100 g in the extrudates whereas phytate content remained unaffected by extrusion (248–286 )Publication Distribution of Rotavirus Genotypes among Children with Diarrhea Prior to Vaccine Introduction in Western Kenya(Journal of Infectious Diseases and Epidemiology, 2019-02-16) Ochieng, John B; Khagayi, Sammy; Ogwel, Billy; Onkoba, Reuben; Apondi, Evans; Juma, Jane; Seheri, Mapaseka; Peenze, Ina; Onyango, Clayton; Hunsperger, Elizabeth; Tabu, Collins; Kibet, Sergon; Omore, Richard; Odhiambo, Frank; Mphahlele, Jeffrey; Verani, Jennifer R; Fields, Barry; Bigogo, Godfrey; Laserson, Kayla F; Tate, Jacqueline E; Mwenda, Jason M; Breiman, Robert FBackground: Group A rotavirus is the leading cause of diarrhea hospitalization among children worldwide. Most fatal rotavirus-associated diarrhea cases among children under 5 years occur in Africa and Asia. We investigated the molecular epidemiology of circulating rotavirus strains among children less than 5 years in western Kenya to provide baseline data on the prevalence of each genotype prior to the introduction of monovalent rotavirus vaccine in Kenya. Methods: From January 2010 to December 2013, stool samples were collected from 1677 children with acute gastroenteritis. All specimens were transported to Kenya Medical Research Institute, Center for Global Health Research, Enterics Laboratory and tested for rotavirus antigens using enzyme immunoassay. Rotavirus dsRNA was extracted from 234 simple randomly selected EIA positive stool samples using QIAamp viral RNA mini kit and tested by semi-nested RT-PCR for G and P genotypes using type-specific primers. The PCR products were analyzed by gel electrophoresis. Chi-square test was used to test the association between rotavirus genotypes and age. Results: Of the 1677 stool samples tested, 401 (23.9%) were positive for group A rotavirus antigen. Of the 234 rotavirus dsRNA extractions analyzed by PCR, 219 (93.6%) and 193 (82.5%) typed positive for at least one of the VP7 genotypes (G type) and VP4 genotypes (P types), respectively. Of the typeable, 19 were mixed G types and P types. However, 15 VP7 and 41 VP4 were nontypeable. The predominant genotypes detected included G1 (30%), G9 (27%), G8 (10%) and G3 (9%) for the G types, and P[8] (33%) and P[6] (30%) for the P types. The predominant combinations were: G1P[8] (15%), G9P[8] (12%) and G3P[6] (8%) which combined accounted for 35% of the genotypes detected. Conclusion: This study demonstrated the genotype diversity and dominance of G1, G3, G8 and G9 in combination with P[6] and P[8] as the most common genotypes associated with rotavirus gastroenteritis in this population. Continuous surveillance is necessary to monitor the effectiveness of the vaccine and shifts among the circulating genotypes in this region.Publication Effect of Extrusion Variables on Fermented Maize–Finger Millet Blend in the Production Of Uji(ScienceDirect, 2004) Onyango Calvin; Henle Thomas; Ziems Anette; Thea Hofmann; Thomas BleyThe effects of screw speed, feed moisture, glucose, fructose, sucrose and maltose on extrusion of lactic fermented and dried maize–finger millet blend was investigated. Fermentation caused a reduction in sectional expansion index, flour bulk density and water absorption index (WAI) but increased specific volume, water solubility index and darkened the extrudates. Increase in feed moisture (13–25%) reduced sectional expansion index, specific volume and yellowness but increased extrudate moisture content, bulk density and darkness of the extrudates. Increasing screw speed (158–242 rpm) had a negative correlation only with specific volume and lightness (P<0.05). An increase in the content of any of the sugars reduced extrudate moisture content, sectional expansion index, WAI and specific volume but increased bulk density and water solubility index. Extrudates treated with monosaccharides were darker than extrudates treated with disaccharides.Publication Effects of Seasonality on Water, Feed, Milk Yield and Reproductive Performance of Dairy Cows in Smallholder Farms in Eastern Africa(NM-AIST, 2020-08-30) Ongadi Patrick; Mpolya Abraham; Gachuiri Charles; Muyekho FrancisOngadi Patrick Mudavadi, Mpolya Abraham Emmanuel, Gachuiri Charles, Muyekho Francis Namasake and Lukuyu Adubwa Bernard Aim: The smallholder dairy industry in Eastern Africa continues to be characterized by seasonality driven milk fluctuations and reproductive performance of dairy cows. In this review, we present important effects of changes in seasons on water, feed quantity and quality, milk yield and reproductive performance of dairy cows in smallholder dairy farms. Methods: We considered peer-reviewed publications from 1990 to 2019, and extracted any information pertaining to the effects and intensity of changes in seasons and implications on water, feed quality and quantity, milk yield and reproductive performance. Results: Seasonal variation in rainfall, characteristic of the East Africa region, is strongly reflected in cropping and feeding calendars. Hence, 305-days lactation milk production per cow in Eastern Africa ranges from 850-3150 kg/cow/year, which has not increased, partly because of lack of improvement in nutrition and management, but also due to slow genetic selection of breeds that matches available feed to milk yield and reproductive performance. High milk fluctuations arise mostly because of farmers’ dependence on rainfall for feed production and rarely make provisions for preserving fodder for the dry season, as there isn’t adequate forage (fodder and pasture) even during the wet season. Conclusion: For the smallholder dairy farmers to remain competitive, it is important to increase the dairy value chain capability to manage implications of changes in seasons on milk yield and reproduction. Therefore, in order to overcome the current seasonal changes, we have discussed technological interventions in adoption of practical, sustainable farmer-led strategies for optimizing water and feed production, milk yield and reproductive performance in Eastern Africa. We have also identified knowledge gaps where research is needed to guide dairy value chain stakeholders on how to ameliorate current seasonal changes or that we expect will occur in the future.Publication Effects of Supplementation with Climate-Smart Feeds on Camel Weight Gain during Drought(• African Journal of Science Technology and Social Sciences, 2024-05-31) Arimi Joshua; Musalia Levi; Changwony David; Thiakunu Florence; Huka GuyoCamels are very resilient and can survive up to 14 days without water. They can also keep producing milk when other livestock succumb during drought. This makes camel the suitable animal to harness for climate change. Currently, there are no formulated camel feeds for feeding camels during the drought when the shrubs and vegetation dries up. This has led to conflicts between camel herders and crop farmers. In the recent past as recent as this year, 2022, it has resulted to loss of human lives and camels in an alarming rate. It is estimated that during drought there is loss of at least 100 lives pa as a result of this conflict. The loss of camels due to drought is hundreds of thousands. This study aimed at formulating and processing camel feeds with locally available ingredients which can be stored to be used during drought. The study was carried out at Garemara, Isiolo. The feeds were formulated with locally available materials including acacia pods and local grass. The feeds were analysed for the crude protein content and nutrient content. The camels were supplemented at a rate of 1.5 % of the body weight. Ten camels were purchased for the study. Five camels were supplemented while the other five camel were un supplemented. The camels were weighed fortnightly to monitor weight changes.The formulated camel feed has a crude protein of 17%. The camels supplemented with climate-smart feed increased the weight at a rate of 15% while those unsupplemented increased the weight at 10% Climate smart feeds can be formulated and used to supplement camel feeds during drought and avert loss of camels and human conflicts.Publication Evaluation of the effect of different types of stabilizers and salt on improving the physico-chemical properties of camel milk yoghurt(The Inaugural MUST International Conference, 2022-06-30) Arimi M. Joshua; Mwobobia FlorenceCamel milk is recognised for its nutritional and medicinal properties. Camels are very resilient can also withstand harsh and hot climatic conditions and produce milk over a long period of time when other livestock succumb. Converting camel milk into yoghurt can increase milk shelf-life ensuring its available during drought enhancing food security. However, processing of camel milk yoghurt is challenging due to weak coagulum which has unacceptably low viscosity. The objective of this study was to evaluate the effect of different stabilisers and salt on viscosity, titratable acidity, pH, water holding capacity and syneresis of camel milk yoghurt. Camel milk was obtained from Anolei women group, Isiolo County and transported to Food Science Laboratories in Meru University of Science and Technology. The milk was assessed for quality through platform tests. Effect of two stabilisers (starch and modified starch) and a salt on yoghurt properties were evaluated. The stabilisers were added in the range of 2- 3% while salt concentration was 0.075%. The fermentation was carried out under controlled conditions in a cheese vat. After fermentation, yoghurt was analysed for the viscosity, water holding capacity, susceptibility to syneresis, tritratable acidity and change in pH over six hours during fermentation and after 7, 14 and 21 days during storage under refrigeration. The pH of yoghurt with modified starch decreased with fermentation period (1-6 hrs) from 5.8 ± 0.2 to 4.3 ± 0.2, while for yoghurt containing starch decreased from 5.8 – 4.0. The water holding capacity increased with increasing stabiliser concentration from 2-3%. The susceptibility to syneresis decreased with increasing stabiliser concentration but increased over the storage period. The viscosity increased with increasing the stabilisers concentration from 2 - 3% during fermentation. At a concentration of 3% modified starch and 0.075% salt resulted in highest viscosity (0.173±0.01 Pa.s) which is similar to that of commercial yoghurt. This study shows that it is possible to manufacture camel milk yoghurt by adding modified starch and salt to achieve similar physico-chemical properties to available commercial yoghurts.Publication Examining Which Clinicians Provide Admission Hospital Care in a High Mortality Setting and Their Adherence to Guidelines: An Observational Study in 13 Hospitals(BMJ, 2020-03-12) Ogero, Morris; Akech, Samuel; Malla, Lucas; Agweyu, Ambrose; Irimu, Grace; English, MikeBackground: We explored who actually provides most admission care in hospitals offering supervised experiential training to graduating clinicians in a high mortality setting where practices deviate from guideline recommendations. Methods: We used a large observational data set from 13 Kenyan county hospitals from November 2015 through November 2018 where patients were linked to admitting clinicians. We explored guideline adherence after creating a cumulative correctness of Paediatric Admission Quality of Care (cPAQC) score on a 5-point scale (0–4) in which points represent correct, sequential progress in providing care perfectly adherent to guidelines comprising admission assessment, diagnosis and treatment. At the point where guideline adherence declined the most we dichotomised the cPAQC score and used multilevel logistic regression models to explore whether clinician and patient-level factors influence adherence. Results There were 1489 clinicians who could be linked to 53 003 patients over a period of 3 years. Patients were rarely admitted by fully qualified clinicians and predominantly by preregistration medical officer interns (MOI, 46%) and diploma level clinical officer interns (COI, 41%) with a median of 28 MOI (range 11–68) and 52 COI (range 5–160) offering care per study hospital. The cPAQC scores suggest that perfect guideline adherence is found in ≤12% of children with malaria, pneumonia or diarrhoea with dehydration. MOIs were more adherent to guidelines than COI (adjusted OR 1.19 (95% CI 1.07 to 1.34)) but multimorbidity was significantly associated with lower guideline adherence. Conclusion Over 85% of admissions to hospitals in high mortality settings that offer experiential training in Kenya are conducted by preregistration clinicians. Clinical assessment is good but classifying severity of illness in accordance with guideline recommendations is a challenge. Adherence by MOI with 6 years’ training is better than COI with 3 years’ training, performance does not seem to improve during their 3 months of paediatric rotations.Publication Genetic parameters for production and feeding behaviour traits in crossbred steers fed a finishing diet at different ages(NRC Research Press, 2013-03) Durunna, Obioha N.; Mujibi, Fidalis D. N.; Nkrumah, Donald J.; Basarab, John A.; Okine, Erasmus K.; Moore, Stephen S.; Wang, ZhiquanDurunna, O. N., Mujibi, F. D. N., Nkrumah, D. J., Basarab, J. A., Okine, E. K., Moore, S. S. and Wang, Z. 2013. Genetic parameters for production and feeding behaviour traits in crossbred steers fed a finishing diet at different ages. Can. J. Anim. Sci. 93: 79–87. Because cattle can be raised postweaning under several feeding regimes, this study examined the consistency of phenotypic and genetic parameters of some production and feeding behaviour traits between two feeding periods that beef cattle received a finisher diet. Crossbred steers (n=851) were used for feeding trials from 2002 to 2009 where the steers received a finisher diet either during the fall–winter season (FP1) or during the winter–spring season (FP2). The steers evaluated in FP2 received a backgrounding diet in FP1. Traits examined include dry matter intake (DMI), average daily gain (ADG), gain: feed ratio (G:F), residual feed intake (RFI), and ultrasound measures of backfat thickness (UBF), rib-eye area (UREA) and marbling (UMB). Others include feeding duration (FD), headdown time (HDT) and feeding frequency (FF). As expected, there was no difference (P=0.90) between the RFI measured in the two periods. The two periods were similar for UBF (P=0.87) and UREA (P=0.25),while DMI, ADG and UMB were greater (P<0.04) in FP2 than in FP1. The FD, HDT and FF were greater (P<0.0001) in FP1 compared with FP2. Heritability estimates were calculated in FP1 and FP2, respectively, for ADG (0.38, 0.28), DMI (0.52, 0.42), RFI (0.16, 0.27), G:F (0.18, 0.33), HDT (0.35, 0.18) and FF (0.26, 0.46). More importantly, genetic correlations between FP1 and FP2 were estimated for DMI (0.61), RFI (0.65) and G:F (0.60). The results may indicate the influence of age or feeding period or both on these traits, which may suggest the need for multi-environment genetic evaluations to identify superior animals.Publication Helminthiasis and Malaria Co-Infection Among Women of Reproductive Age in a Rural Setting of Kilifi County, Coastal Kenya: A Mixed Method Study(PLOS GLOBAL PUBLIC HEALTH, 2024-06-03) Masaku, Janet; Mutuku, Francis; Kihara, Jimmy H.; Mwandawiro, Charles; Okoyo, Collins; Kanyi, Henry; Kamau, Joyce; Kaduka, Lydia; Ng’ang’a, Zipporah; Jeza, Victor T.Soil transmitted helminthiasis (STH), Schistosoma haematobium and malaria co-infection lead to increased susceptibility to other infections and poor pregnancy outcomes among women of reproductive age (WRA). This study sought to establish risk factors, burden of co-infection with STH, S. haematobium and Plasmodium sp. among WRA in Kilifi County, Kenya.A mixed method cross-sectional study was conducted on 474 WRA in 2021. Simple random sampling was used to select WRA from four villages in two purposively sampled sub-counties. Study participants were interviewed, and stool samples collected and analysed using Kato-Katz technique for STH. Urine samples were collected for examination of S. haematobium while malaria microscopic test was done using finger prick blood samples. Further, 15 focus group discussions (FGDs) were conducted with purposively selected WRA and qualitative data analyzed thematically using Nvivo software. Quantitative and qualitative methods were triangulated to comprehensively strengthen the study findings. Prevalence of S. haematobium was 22.3% (95%CI: 13.5–36.9), any STH 5.2% (95%CI: 1.9–14.3) and malaria 8.3% (95%: 3.8–18.2). Co-infections between any STH and S. haematobium was 0.8% (95%CI: 0.2–3.2) and between S. haematobium and malaria 0.8% (95%CI: 0.2–3.1). Multivariable analysis showed increased odds of any STH infections among participants in Rabai Sub-County, (aOR = 9.74; p = 0.026), businesswomen (aOR = 5.25; p<0.001), housewives (aOR = 2.78; p = 0.003), and casual laborers (aOR = 27.03; p<0.001). Qualitative analysis showed that the three parasitic diseases were common and responsible for possible causes of low birth weight, susceptibility to other infections and complications such as infertility and cancer later in life.The study demonstrated that STH, S. haematobium and malaria are still a public health problem to WRA. Some of the associated risks of infection were geographical location, socio-economic and WASH factors. Hence the need to implement integrated control efforts of the three parasitic infection.Publication In Vitro and In Vivo Antimalarial Activity of Nigella Sativa L. Extracts(Journal of Medicinal Plants Research, 2019-12) Oyweri Job; Mohammed Awadh; Udu Rahma; Gathirwa Jeremiah; Too Edwin; Omondi Protus; Kimani Francis; Hashim Suhaila; Abubakar LailaThe Arabs, Asians and, Traditional Health Practitioners in Mombasa county found in Kenya have been using Nigella sativa L. seeds to traditionally manage malaria associated symptoms that is, headache, fever, chills, loss of appetite among others. The present study investigated in vitro antiplasmodial, in vivo antimalarial activities and safety of different extracts of N. sativa. Five extracts obtained via aqueous extraction and sequential extraction using hexane, dichloromethane, ethyl acetate and methanol were tested against in vitro cultures of Plasmodium falciparum. The most active extracts (methanolic and ethyl acetate) were assessed for cytotoxicity and toxicity. The two active extracts were evaluated in vivo against Plasmodium berghei ANKA strain at 500, 250 and 125 mg/kg/day. On in vitro assay, methanolic and ethyl acetate extracts showed good activity with IC50 of 80.48±12.29 and 69.81±5.24 µg/ml against W2 strain and 31.93±4.31 and 53.79±6.02 µg/ml against D6 strain, respectively. The extracts exhibited weak cytotoxicity on Vero cells and high parasitemia suppression of 75.52 and 75.30% at 500 mg/kg dose of methanolic and ethyl acetate extracts respectively. Notably, there was significant decrease (p<0.001) in activity with lower doses of the extracts. The results explain thetraditional use of this plant in the Middle East and Mombasa CountyPublication Influence of Incubation Temperature and Time on Resistant Starch Type III Formation From Autoclaved and Acid-Hydrolysed Cassava Starch(SciencDirect, 2006-11-24) Onyango Calvin; Bley Thomas; Annette Jacob; Henle Thomas; Rohm HaraldRaw cassava starch, having 74.94 and 0.44 g/100 g resistant starch type II and III (RS II and RS III), respectively, was autoclaved at 121 °C in water, 1, 10 or 100 mmol/L lactic acid. The formation of RS III was evaluated in relation to variable incubation temperature (−20 to 100 °C), incubation time (6–48 h) and autoclaving time (15–90 min). Negligible to low quantities of RS III (0.59–2.42 g/100 g) were formed from autoclaved starch suspended in 100 mmol/L lactic acid, whereas intermediate to high quantities (2.68–9.97 g/100 g) were formed from autoclaved starch suspended in water, 1 or 10 mmol/L lactic acid, except for treatments with water or 10 mmol/L lactic acid incubated at 100 °C for 6 h (1.74 g/100 g). Autoclaving times corresponding to maximum RS III contents were 15 and 45 min for water and 10 mmol/L lactic acid, respectively. Whereas, the RS III fractions from cassava starch suspended in water had melt transitions between 158 and 175 °C with low endothermic enthalpies (0.2–1.6 J/g), the thermal transitions of the acidtreated samples were indistinct.Publication Molecular Diversity of a Seemingly Altitude Restricted Ustilago Kamerunensis Isolates in Kenya: A Pathogen of Napier Grass(American Journal of Molecular Biology, 2018-08) Omayio Dennis O.; Musyimi David M.; Muyekho Francis N.; Ajanga Samuel I.; Midega Charles A. O.; Wekesa Clabe S.; Okoth Patrick; Kariuki Innocent W.The Central region of Kenya which is the second largest market oriented dairy zone, faces a threat in milk production. The challenge is a disease known as the napier head smut caused by Ustilago kamerunensis. This fungal microorganism is a facultative pathogen which has been reported to cause yield losses in napier grass (Pennisetum purpureum) ranging from 25% to 46% across the affected areas. Additionally, there are reports of the continual spread of the disease into neighbouring county of Nakuru in Rift-Valley region which is the leading milk producing zone in the country. This scenario of spread is worrying combined with observation of variations in damage levels of napier grass clones across the five counties of Central Kenya. These observations led to the hypothesis that possible differences might be existing among the Ustilago kamerunensis variants in Kenya. Further, the differences in biomass yield losses that are within a certain percentage range mentioned-above, seemed to support the existence of possible differences. Therefore, to inform effective integrated management strategies of the pathogen in case it’s co-evolving, this study sought to determine the molecular differences s might be existing among the Ustilago kamerunensis variants in Kenya. Further, the differences in biomass yield losses that are within a certain percentage range mentioned-above, seemed to support the existence of possible differences. Therefore, to inform effective integrated management strategies of the pathogen in case it’s co-evolving, this study sought to determine the molecular differences of Ustilago kamerunensis isolates in affected counties using ITS 1 and 2 regions which are spanned by 5.8S ribosomal RNA gene. The Ustilago kamerunensis propagules were systematically collected from affected counties’ hot spot areas for sequencing and phylogenetic analysis. The study revealed the most affected areas to be within the mean altitude level of 1988.17 ± 71.97 metres above sea level. Further, differences in the growth in vitro and molecular characteristics of the seeming altitude restricted isolates were observed. The Kiambu, Nyandarau and Nakuru counties isolates clustered together, whereas those of Murang’a, Nyeri and Kirinyaga formed another clade. The sequences of sixteen Ustilago kamerunensis isolates were deposited in GenBank with accession numbers ranging from MG722754 to MG722769. The results suggest the existence of possible genetic divergence of the isolates which might be reflected in their pathogenic potential too. Effective integration of management strategies is vital towards slowing the phenomenon for an optimal mitigation of the disease in Kenya.Publication Parasites Modify Sub-Cellular Partitioning of Metals in the Gut of Fish(Pubmed, 2011) Okoth Oyoo Elijah; Admiraal Wim; Odipo Osano; Kraak Michael; Gichuki John; Ogwai CalebInfestation of fish by parasites may influence metal accumulation patterns in the host. However, the subcellular mechanisms of these processes have rarely been studied. Therefore, this study determined how a cyprinid fish (Rastrineobola argentea) partitioned four metals (Cd, Cr, Zn and Cu) in the subcellular fractions of the gut in presence of an endoparasite (Ligula intestinalis). The fish were sampled along four sites in Lake Victoria, Kenya differing in metal contamination. Accumulation of Cd, Cr and Zn was higher in the whole body and in the gut of parasitized fish compared to non-parasitized fish, while Cu was depleted in parasitized fish. Generally, for both non-parasitized and parasitized fish, Cd, Cr and Zn partitioned in the cytosolic fractions and Cu in the particulate fraction. Metal concentrations in organelles within the particulate fractions of the non-parasitized fish were statistically similar except for Cd in the lysosome, while in the parasitized fish, Cd, Cr and Zn were accumulated more by the lysosome and microsomes. In the cytosolic fractions, the non-parasitized fish accumulated Cd, Cr and Zn in the heat stable proteins (HSP), while in the parasitized fish the metals were accumulated in the heat denatured proteins (HDP). On the contrary, Cu accumulated in the HSP in parasitized fish. The present study revealed specific binding of metals to potentially sensitive sub-cellular fractions in fish in the presence of parasites, suggesting interference with metal detoxification, and potentially affecting the health status of fish hosts in Lake Victoria.Publication Participatory Evaluation and Yield Determination of Climate-smart Brachiaria Grasses for Improving Livestock Production among the Farmers in Embu and Meru Counties(Asian Journal of Soil Science and Plant Nutrition, 2021-02-03) Muriithi Catherine; Nganga Beatrice; Kagete Eliud; Njarui Donald; Micheni AlfredAims: To introduce brachiaria grasses in Meru and Embu Counties to increase the range of fodder/forage varieties available to smallholders through the use of climate-smart brachiaria grasses for increased income. The project also aimed at identifying the best brachiaria varieties suitable for the target Agro-Ecological ones through evaluation by the farmers and yield assessment. Study Design: Randomized Complete Block Design (RCBD) Place and Duration of Study: The study was carried out in Embu and Meru Counties during the short rains of 2015. Methodology: Three varieties of brachiaria were introduced in the short rains of 2015 in KALRO Embu, Geeto Igoji in Meru, and Embu County. These were Brachiaria decumbense -Cultivar Basilisk, Brachiaria brizantha- Cultivar BRS Piata and Brachiaria brizantha- Cultivar Toledo. Plots of 5x5m were planted and replicated three times using Randomized Complete Block Design (RCBD) to increase the range of fodder/forage varieties available to smallholder and assess the yield and acceptability of the different brachiaria grasses varieties. The three varieties were planted in the mega demonstration sites. The grass performance was analyzed through pairwise ranking and the grass with the best attributes was selected. Yield data was also collected. Results: After ranking, the results indicated that the rate of growth and the amount of biomass as the most important attributes followed by the animals' response after feeding and the rate of rejuvenation after harvesting respectively. Using the attributes, the group members concluded that Brachiaria decumbense- Cultivar basilisk was the best followed by brachiaria brizantha- Cultivar piata and finally brachiaria brizantha- Cultivar Toledo. Conclusion: In conclusion, based on the attributes, the best brachiaria varieties for use in Embu and Meru Countries are Brachiaria decumbense –Cultivar Basilisk and Brachiaria brizanthaCultivar Toledo. Based on yield, Brachiaria brizantha- Cultivar Toledo is the best in Embu County while Brachiaria brizantha- Cultivar Basilisk is the best in Meru County